Research Group Publications

 
  • A. Agrawal, S.V. Sambare, L. Narlikar And R. Siddharthan, THiCweed: fast, sensitive detection of sequence features by clustering big datasets, Nucleic Acids Res., to appear, (2018).
  • S. Mitra; and L. Narlikar, No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites, Bioinformatics., 32(5), 779 - 81 (2016).
  • L. Taher, L. Narlikar And I. Ovcharenko , Identification and computational analysis of gene regulatory elements, Cold Spring Harbor Protocols., 2015(1) pdb.top083642, (2015).
  • L. Narlikar, Multiple novel promoter-architectures revealed by decoding the hidden heterogeneity within the genome, Nucleic Acids Research., 42, 12388 - 12403 (2014).
  • L. Narlikar, MuMoD: a Bayesian approach to detect multiple modes of protein–DNA binding from genome-wide ChIP data, Nucleic Acids Res., 41, 21 - 32 (2013).
  • L. Narlikar; N. Mehta; S. Galande; and M. Arjunwadkar, One size does not fit all: On how Markov model order dictates performance of genomic sequence analyses, Nucleic Acids Res., 41, 1416 - 1424 (2013).
  • L. Narlikar and R. Jothi, ChIP-Seq data analysis: Identification of protein-DNA binding sites with SISSRs peak finder, Methods Mol. Biol., 802, 305 - 322 (2012).
  • L. Taher; L. Narlikar; and I. Ovcharenko, CLARE: Cracking the LAnguage of Regulatory Elements, Bioinformatics., 28, 581 - 583 (2012).
  • G. Wei;...L. Narlikar;...and K. Zhao, Genome-wide analyses of transcription factor GATA3-mediated gene regulation in distinct T cell types, Immunity., 35, 299 - 311 (2011).
  • L. Narlikar, N. Sakabe, A. Blanski, F. Arimura, J. Westlund, M. Norbrega And I. Ovcharenko, Genome-wide discovery of human heart enhancers, Genome Research., 20, 381 - 392 (2010).
  • R. Gordan, L. Narlikar And A. Hartemink, Finding regulatory DNA motifs using alignment-free evolutionary conservation information, Nucleic Acids Research., 38:e90, (2010).