Research Group Publications

• Bendre AD, Suresh CG, Shanmugam D And Ramasamy S, Structural insights into the unique inhibitory mechanism of Kunitz type trypsin inhibitor from Cicer arietinum L, J Biomol Struct Dyn., , 1 - 38 (2018), DOI:10.1080/07391102.2018.1494633.
• Anurag Shukla, Kellen L. Olszewski, Manuel Llinás, Leah M. Rommereim, Barbara A. Fox, David J. Bzik, Dong Xia, Jonathan Wastling, Daniel Beiting, David S. Roos And Dhanasekaran Shanmugam, Glycolysis is important for optimal asexual growth and formation of mature tissue cysts by Toxoplasma gondii, International Journal for Parasitology., , (2018).
  Accepted
• Rahul Salunke, Tobias Mourier, Manidipa Banerjee, Arnab Pain And Dhanasekaran Shanmugam, Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii, PlOS Biology., 16, e2006128 (2018), DOI:https://doi.org/10.1371/journal.pbio.2006128.
• Pronay Das, Palak Babbar, Nipun Malhotra, Manmohan Sharma, Goraknath R. Jachak, Rajesh G. Gonnade , Dhanasekaran Shanmugam, Karl Harlos, Manickam Yogavel, Amit Sharma And D. Srinivasa Reddy, Specific Stereoisomeric Conformations Determine the Drug Potency of Cladosporin Scaffold against Malarial Parasite, J. Med. Chem., 61, 5664 - 5678 (2018), DOI:10.1021/acs.jmedchem.8b00565.
• Paresh R. Athawale, Gorakhnath R. Jachak, Anurag Shukla, Dhanasekaran Shanmugam And and D. Srinivasa Reddy, Efforts To Access the Potent Antitrypanosomal Marine Natural Product Janadolide: Synthesis of Des-tert-butyl Janadolide and Its Biological Evaluation, ACS Omega., 3, 2383 - 2389 (2018), DOI:10.1021/acsomega.7b01920.
• Shweta Kishor Sonawane and Subashchandrabose Chinnathambi*, Prion-like Propagation of Post-translationally Modified Tau in Alzheimer’s Disease, Journal of molecular Neuroscience, Springer., , 1 - 11 (2018), DOI:10.1007/s12031-018-1111-5.
• Shweta Sonawane and Subashchandrabose Chinnathambi*, Protein Capped Metal Nanoparticles Inhibit Tau Aggregation in vitro, ACS Chemical Neuroscience (under review))., Just submitted, (2018).
• Abhishek Balmik and Subashchandrabose Chinnathambi*, Multi-faceted Role of Melatonin in Neuroprotection and Amelioration of Tau Aggregates in Alzheimer`s Disease, Journal of Alzheimer's Disease (JAD))., 2018;62(4):1481-1493, (2018).
• Nalini Vijay Gorantla and Subashchandrabose Chinnathambi*, Tau Protein Squired by Molecular Chaperones during Alzheimer’s Disease (under revision), Journal of Molecular Neuroscience (Springer)., , (2018).
• Batkulwar K, Godbole R, Banarjee R, Kassaar O, Williams RJ* And Kulkarni MJ*, Advanced Glycation End Products Modulate Amyloidogenic APP Processing and Tau Phosphorylation: A Mechanistic Link between Glycation and the Development of Alzheimer's Disease. ACS Chem Neuroscience, ACS Chem Neuroscience., May 16;9(5), 988- - 1000 (2018), DOI:doi: 10.1021/acschemneuro.7b00410.
• 1. Banarjee R, Sharma A, Bai S, Deshmukh A And Kulkarni MJ*. , Proteomic study of endothelial dysfunction induced by AGEs and its possible role in diabetic cardiovascular complications. (2018), In press, Journal of Proteomics., in press, (2018).
• Gowtham Subramanian, #a Meenakshi A. Belekar, #b Anurag Shukla, b Jie Xin Tong, c Ameya Sinha, a Trang T. T. Chu, a Akshay S. Kulkarni, d Peter R. Preiser, e D. Srinivasa Reddy, d Kevin S. W. Tan And c Dhanasekaran Shanmugam and Rajesh Chandramohanadas, Targeted Phenotypic Screening in Plasmodium falciparum and Toxoplasma gondii Reveals Novel Modes of Action of Medicines for Malaria Venture Malaria Box Molecules, mSphere., 3, (2018), DOI:10.1128/mSphere.00534-17.
• Jyotsna Singh, Bhushan P. Chaudhari And Poonam Kakkar, Baicalin and chrysin mixture imparts cyto-protection against methyl glyoxal induced cytotoxicity and diabetic tubular injury by modulating RAGE, oxidative stress and inflammation, Environmental Toxicology and Pharmacology., 50, 67 - 75 (2017), DOI:10.1016/j.etap.2017.01.013.
• Singh AK, Ratnasekhar Ch, Chaudhari BP, Singh D, Chattopadhyay BD And Mudiam MKR, Evaluating Metabolic Responses in Mice to Nanosized Titanium Dioxide Particles Using Gas Chromatography- Mass Spectrometry Based Metabolomics, Austin Journal of Anal and Pharmaceutical Chemistry., 4, 1 - 9 (2017).
• Laxman Nawale , Parul Dubey , Bhushan Chaudhari , Dhiman Sarkar And Asmita Prabhune, Anti-Proliferative Effect of Novel Primary Cetyl Alcohol Derived Sophorolipids against Human Cervical Cancer Cells HeLa, PLOS ONE., 12, e0174241 (2017), DOI:10.1371/journal.pone.0174241.
• Mamatha R., Shadab Khan, Pooja Salunkhe, Shruti Satpute, Shuchishweta Kendurkar, Asmita Prabhune, Animesh Deval And Bhushan P. Chaudhari, Rapid synthesis of highly monodispersed silver nanoparticles from the leaves of Salvadora persica, Materials Letters., 205, 226 - 229 (2017), DOI:10.1016/j.matlet.2017.06.089.
• Deshmukh A, Bai S, Aarthy T, Kazi RS, Banarjee R, Rathore R, Vijayakumar MV, Thulasiram HV, Bhat MK And Kulkarni MJ*. , Methylglyoxal attenuates insulin signaling and downregulates the enzymes involved in cholesterol biosynthesis, Molecular BioSystems., , (2017), DOI:DOI: 10.1039 /C7MB00305F.
• Bhat S, Jagadeeshaprasad MG, Venkatasubramani V And Kulkarni MJ*. , Abundance matters: role of albumin in diabetes, a proteomics perspective, Expert Reviews of Proteomics., 13:, 1 - 13 (2017), DOI:10.1080/14789450.2017.1352473.
• Dange MC, Bhonsle HS, Godbole RK, More SK, Bane SM, Kulkarni MJ* And Kalraiya RD*, Mass spectrometry based identification of galectin-3 interacting proteins potentially involved in lung melanoma metastasis, Mol Biosyst., Sep 6, (2017), DOI:doi: 10.1039/c7mb00260b.
• Mary S, Kulkarni MJ*, Mehendale SS, Joshi SR And Giri AP*, Differential accumulation of vimentin fragments in preeclamptic placenta. 2017 Jul 28. doi: [Epub ahead of print] PubMed PMID: 28752964, Cytoskeleton (Hoboken)., Jul 28. doi: [Epub ahead of print] PubMed PMID: 28752964, (2017), DOI:10.1002/cm.21390.
• Shweta Bhat, Sheon Mary, Ashok P. Giri And and Kulkarni MJ*. , Advanced glycation end products (AGEs) in diabetic complications. 423-449, In Book “Mechanisms of Vascular Defects in Diabetes Mellitus” Edited by Kartha CC, Ramachandran S, Pillai R, Published by Springer, In Book “Mechanisms of Vascular Defects in Diabetes Mellitus” Edited by Kartha CC, Ramachandran S, Pillai R, Published by Springer., , (2017), DOI:DOI 10.1007/978-3-319-60324-7_19.
• Vannuruswamy G, Korwar AM, Jagadeeshaprasad MG And Kulkarni MJ*. , Targeted Quantification of the Glycated Peptides of Human Serum Albumin, Methods Mol Biol., 1619:403-416, (2017), DOI:doi: 10.1007/978-1-4939-7057-5_28.
• Mary S, Kulkarni MJ*, Joshi S, Mehendale S And Giri AP*, Tubulointerstitial nephritis antigen-like 1 protein is downregulated in the placenta of pre-eclamptic women. Clinical Proteomics (in press), Clinical Proteomics., Clinical Proteomics 2017 Mar 21;14:8, (2017).
• Nalini Vijay Gorantla, Puneet Kandelwal And Pankaj Poddar and Subashchandrabose Chinnathambi*, Microtubule-Associated Protein-Tau Conformation Mapped by Raman Spectroscopy, Methods in Molecular Biology (MiMB- Tau Protein) Springer Publications., , (2017).
• Nalini Vijay Gorantla, Alexander V. Shkumatov And and Subashchandrabose Chinnathambi*, Conformational Dynamics of Intracellular Tau Revealed by Circular Dichorism and SAXS, Methods in Molecular Biology (MiMB- Tau Protein) Springer Publications., , (2017).
• https://scholar.google.com/citations?user=JyaZKBQAAAAJ&hl=en, Paste link in google for complete list of publications., , (2017).
• ?K. R. S. Ch, ra Kumar, Sourav Pal, A. Goursot , R. Vetrivel, Kriti Gupta, Sandeep Kumar, Rinkesh Gupta, Akanksha Sharma, Alok K. Verma, K. Stalin, Bhushan P. Chaudhari, Mukul Das, Surinder P. Singh And Premendra D. Dwivedi, Reversion of Asthmatic Complications and Mast Cell Signalling Pathways in BALB/c Mice Model Using Quercetin Nanocrystals, Journal of Biomedical Nanotechnology., 12, 1 - 15 (2016), DOI:10.1166/jbn.2016.2197.
• Priya S. Geetha, Gupta Ankur, Jain Era, Sarkar Joyita, Damania Apeksha, Jagdale Pankaj, Chaudhari Bhushan, Gupta Kailash, Kumar And Ashok, Bilayer Cryogel Wound Dressing and Skin Regeneration Grafts for the Treatment of Acute Skin Wounds, 8, 15145 - 15159 (2016).
• Rinkesh Kumar Gupta, Sandeep Kumar, Kriti Gupta, Akanksh Sharma, Ruchi Roy, Alok Kumar Verma, Bhushan P. Chaudhari, Mukul Das And Premendra D. Dwivedi, Cutaneous exposure to clinically-relevant pigeon pea (Cajanus cajan) proteins promote TH2-dependent sensitization and IgE-mediated anaphylaxis in Balb/c mice, Journal of immunotoxicology., 13, 827 - 841 (2016), DOI:10.1080/1547691X.2016.1205159.
• Sakshi Mishra, Prachi Tewari , Bhushan P. Chaudhari , Premendra D. Dwivedi , Haushila P. Pandey And Mukul Das, Deoxynivalenol induced mouse skin tumor initiation: Elucidation of molecular mechanisms in Human Hacat keratinocytes, International Journal of Cancer., 139, 2033 - 2046 (2016), DOI:10.1002/ijc.30260.
• Priyanka Singh, Ramesha Jayaramaiah, Sachin Agawane, Vannuruswamy Garikapati, Arvind Korwar, Atul Anand, Vitthal Dhayude, Mahemud Shaikh, Rakesh Joshi, Ramanamurthy Boppana, Mahesh Kulkarni, Hirekodathakallu Thulasiram And and Ashok Giri, Potential Dual Role of Eugenol in Inhibiting Advanced Glycation End Products in Diabetes: Proteomic and Mechanistic Insights, Scientific reports., , (2016), DOI:10.1038/srep18798.
• Mary S, Kulkarni MJ*, MalakarD, Joshi S, Mehendale S And Giri AP* , Placental proteomics provides insights into pathophysiology of pre-eclampsia and predicts possible markers in plasma, Journal of Proteome Research., (in press), (2016), DOI:DOI: 10.1021/acs.jproteome.6b00955.
• Jangale NM, Devarshi PP, Bansode SB, Kulkarni MJ And Harsulkar AM, Dietary flaxseed oil and fish oil ameliorates renal oxidative stress, protein glycation, and inflammation in streptozotocin–nicotinamide-induced diabetic rats, Journal of Physiology and Biochemistry., , (2016), DOI:DOI: 10.1007/s13105-016-0482-8 JPBY-D-15-00276.1.
• Jana A, Batkulwar KB, Kulkarni MJ* And Sengupta N*. , Glycation induces conformational changes in amyloid-ß peptide and enhances its aggregation propensity: Molecular Insights, Physical Chemistry Chemical Physics., , (2016), DOI:DOI: 10.1039/c6cp05041g.
• S.Girisham And V.Koteswara Rao and S.M.reddy, Book: Taxonomy of Mycotoxigenic Fungi, Scientic Publishers., 1, 1 - 322 (2016).
• B. Sreelatha, V.Koteswara Rao, R.Ranjith Kumar And S. Girisham and S. M. Reddy, Culture conditions for the production of thermostable lipase by Thermomyces lanuginosus, Journal of Basic and Applied Sciences., 5, xx - xx (2016), DOI:10.1016/j.bjbas.2016.11.010.
• V. Koteswara Rao, B. Aruna, Md. Rafiyuddin, K. Narasimha Rao And S. Girisham and S.M. Reddy, Influence of relative humidity on mycotoxin production and biodeterioration of poultry feed, Cogent Food and Agriculture., 2, 1 - 9 (2016), DOI:http://dx.doi.org/10.1080/23311932.2016.1207397.
• Koteswara Rao, V., S.Girisham And S.M.Reddy, Influence of indigenous fungi on ochratoxin A production by two species of Penicillium isolated from poultry feed, Animal Nutrition., 2, 225 - 228 (2016), DOI:10.1016/j.aninu.2016.04.004.
• Koteswara Rao, V., S. Girisham And S.M.Reddy , Efficacy of food preservatives and volatile compounds in the control of OTA production by Penicillium species, Proc. Nat Acad. Sci, India (Biol. Sci., 86, 699 - 706 (2016), DOI:10.1007/s40011-015-0513-1.
• Koteswara Rao, V., S. Girisham And S.M. Reddy , Prevalence of toxigenic Penicillium species associated with poultry house in Telangana, India, Arch. Environ. Occup. Health., 71, 353 - 361 (2016), DOI:10.1080/19338244.2016.1140627.
• Batkulwar KB, Jana A, Godbole RK, Sengupta N And Kulkarni MJ*, Hydralazine inhibits Amyloid beta (Aß) aggregation, glycation and ameliorates Aß1-42 induced neurotoxicity, RSC Advances., , (2016), DOI:10.1039/C6RA20225J.
• Vannuruswamy G, Jagadeeshaprasad MG, Kashinath K, Kesavan SK, Bhat S, Korwar AM, Chougale AD, Boppana R, Reddy DS* And Kulkarni MJ*, Molecules with O-acetyl group protect protein glycation by acetylating lysine residues, RSC Advances., 6, 65572 (2016).
• Bhat S, Jagadeeshaprasad MG, Patil YR, Shaikh ML, Regin BS, Mohan V, Giri AP, Balasubramanyam M, Boppana R And Kulkarni MJ, Proteomic insight reveals elevated levels of albumin in circulating immune complexes in diabetic plasma, Molecular Cellular Proteomics., 6, (2016), DOI:mcp.M116.058008.
• Jagadeeshaprasad G Mashanipalya; Kedar B Batkulwar; Nishita N Meshram; Shalbha Tiwari; Arvind M Korwar; Unnikrishnan G Ambika; Mahesh J Kulkarni , Targeted quantification of N-1-(carboxymethyl) valine and N-1-(carboxyethyl) valine peptides of ?-hemoglobin for better diagnostics in diabetes, Clinical Proteomics., , (2016).
• Mehetre GT, Paranjpe AS, Dastager SG And Dharne M, Complete metagenome sequencing based bacterial diversity and functional insights from basaltic hot spring of Unkeshwar, Maharashtra, India, Genomics Data., 7, 140 - 143 (2016), DOI:http://dx.doi.org/10.1016/j.gdata.2015.12.031.
• Mehetre GT, Paranjpe AS, Dastager SG And Dharne M. , Investigation of microbial diversity in geothermal hot spring of Unkeshwar, India based on 16S rRNA amplicon metagenome sequencing, Genome Announcements., 4, e01766 - 15 (2016), DOI:doi:10.1128/genomeA.01766-15.
• http://scholar.google.co.in/citations?user=Dbit_YMAAAAJ, complete list of publication., , (2016).
• Ankur Gupta, Sumrita Bhat, Bhushan P. Chaudhari, Kailash C. Gupta, Magnus Tägil, Ming Hao Zheng, Ashok Kumar And Lars Lidgren, Cell factory-derived bioactive molecules with polymeric cryogel scaffold enhance the repair of subchondral cartilage defect in rabbits, Journal of tissue engineering and regenerative medicine., 11, 1689 - 1700 (2015), DOI:10.1002/term.2063.
• Richa Pahuja, Kavita Seth, Anshi Shukla, Rajendra Kumar Shukla, Priyanka Bhatnagar, Lalit Kumar Singh Chauhan, Prem Narain Saxena, Jharna Arun, Bhushan Pradosh Chaudhari, Devendra Kumar Patel, Sheelendra Pratap Singh, Rakesh Shukla, Vinay Kumar Khanna, Pradeep Kumar, Rajnish Kumar Chaturvedi And Kailash Chand Gupta, Trans-Blood Brain Barrier Delivery of Dopamine-Loaded Nanoparticles Reverses Functional De?cits in Parkinsonian Rats, ACS Nano., 9, 4850 - 4871 (2015), DOI:10.1021/nn506408v.
• Priyanka Bhatnagar, Aditya B. Pant, Yogeshwer Shukla, Bhushan Chaudhari, Pradeep Kumar And Kailash C. Gupta, Bromelain nanoparticles protect against 7,12-dimethylbenz[a]anthracene induced skin carcinogenesis in mouse model, European Journal of Pharmaceutics and Biopharmaceutics., 91, 35 - 46 (2015), DOI:10.1016/j.ejpb.2015.01.015.
• Somaira Khan, Saba Beigh, Bhushan P. Chaudhari, Shikha Sharma, Sayed Aliul Hasan Abdi, Shahzad Ahmad, Firoz Ahmad, Suhel Parvez And Sheikh Raisuddin, Mitochondrial Dysfunction Induced by Bisphenol A is a Factor of its Hepatotoxicity in Rats, Environmental Toxicology., 31, 1922 - 1934 (2015), DOI:10.1002/tox.22193.
• Shamshad Alam, Ravi S. Yadav, Anu Pal, Shakendra K. Purshottam, Bhushan P. Chaudhari, Mukul Das And Kausar M. Ansari, Dietary administration of Nexrutine inhibits rat liver tumorigenesis and induces apoptotic cell death in human hepatocellular carcinoma cells, Toxicology Reports., 2, 1 - 11 (2015), DOI:10.1016/j.toxrep.2014.11.006.
• A. Shanthipriya, V. Koteswara Rao And S. Girisham and S. M. Reddy, Factors influencing L-asparaginase Production by Three Thermophilic Coprophilous Fungi, International Journal of Pharma Sciences., 5, 1242 - 1248 (2015).
• A. Shanthipriya, V. Koteswara Rao, B. Sreelatha And S. Girisham and S. M. Reddy, Effect of Nutritional Factors on Growth and L-asparaginase Production by Three Thermophilic Coprophilous Fungi, Current Research in Microbiology Biotechnology., 3, 707 - 712 (2015).
• Shilpa. P., Koteswara Rao, V., Girisham, S., Reddy And S.M, Influence of different Fusarium species on seed germination and seedlings growth of finger millet (Eleusine coracana L.), Biotechnology: An Indian Journal., 11, 81 - 89 (2015).
• Koteswara Rao, V., S.Girisham And S.M.Reddy, Inhibitory effect of essential oils on growth and ochratoxin A production by Penicillium species, Research Journal of Microbiology., 10, 222 - 229 (2015), DOI:DOI: 10.3923/jm.2015.222.229.
• Shilpa, Penugonda, V. Koteswara Rao, K.Narasimha Rao And S.Girisham and S.M.Reddy, Influence of carbon and nitrogen source on growth, DON and NIV production by two species of Fusarium isolated from finger millets, Telangana, India, Int. J. Pharmacy Pharmaceutical Sciences., 7, 136 - 139 (2015).
• Batkulwar KB, Bansode SB, Patil GV, Godbole RK, Kazi RS, Chinnathambi Subashchandrabose, Shanmugam D And Kulkarni MJ, Investigation of Phosphoproteome in RAGE signaling, Proteomics., October, (2015), DOI:10.1002/pmic.201400169.
• Ganesh M, Sheikh NK, Shah P, Mehetre G, Dharne M And Nagoba BS. , Detection of Clostridium tetani in human clinical samples using tetX specific primers targeting the neurotoxin, J Infect Public Health., , (2015), DOI:doi: 10.1016/j.jiph.2015.06.014.
• Nagoba BS, Dhotre S, Dharne M, Potdar S, Suklikar J And Suryawanshi S. , Viridians group streptococci in patients undergoing tooth extraction, European J Gen Medicine., 12, 227 - 233 (2015), DOI:DOI:10.15197/sabad.1.12.48.
• Dharne M, Kannan P, Murphy C And Smith AD and Bhagwat AA. , Swarm and swim motilities of Salmonella enterica serovar Typhimurium and role of osmoregulated periplasmic glucans, Microbiol Discov., 3, 3 - 6 (2015), DOI:DOI: 10.7243/2052-6180-3-3.
• Ashish A. Chinchansure, Manisha Arkile, Anurag Shukla, Dhanasekaran Shanmugam, Dhiman Sarkar And Swati P. Joshi, Leucas mollissima, a Source of Bioactive Compounds with Antimalarial and Antimycobacterium Activities, Planta Med Lett., , (2015), DOI:10.1055/s-0035-1557830.
• Yong H WooCorresponding Author, Hifzur Ansari, Thomas D Otto, Christen M Klinger, Martin Kolisko, Jan Michálek, Alka Saxena, Dhanasekaran Shanmugam, Annageldi Tayyrov, Alaguraj Veluchamy, Shahjahan Ali, Axel Bernal, Javier del Campo, Jaromír Cihlá?, Pavel Flegontov, Sebastian G Gornik, Eva Hajdušková, Aleš Horák, Jan Janouškovec, Nicholas J Katris, Fred D Mast, Diego Miranda-Saavedra, Tobias Mourier, Raeece Naeem, Mridul Nair, Aswini K Panigrahi, Neil D Rawlings, Eriko Padron-Regalado, Abhinay Ramaprasad, Nadira Samad, Aleš Tom?ala, Jon Wilkes, Daniel E Neafsey, Christian Doerig, Chris Bowler, Patrick J Keeling, David S Roos, Joel B Dacks, Thomas J Templeton, Ross F Waller, Julius Lukeš, Miroslav Oborník And Arnab PainCorresponding Author, Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites, eLife., , (2015), DOI:http://dx.doi.org/10.7554/eLife.06974.
• I. Q. H. Phan, D. R. Davies, N. S. Moretti, D. Shanmugam, I. Cestari, A. Anupama, J. W. Fairman, T. E. Edwards, K. Stuart And S. Schenkman and P. J. Myler, Iron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures, MOLECULAR PARASITOLOGY., , (2015), DOI:10.1107/S2053230X15004185.
• Chilukuri H, Kolekar YM, Bhosle GS, Godbole RK, Kazi RS, Kulkarni MJ*, and Moneesha Fernandesb And *. , N-(3-aminoalkyl)proline derivatives with potent antiglycation activity, RSC Advances., 5, 77332 - 77340 (2015), DOI:10.1039/c5ra12148e.
• Rapole S, Mahesh J. Kulkarni* And Thakur SS & Sengupta S, Next Generation Proteomics Tools, Nature India., , 18 - 20 (2015), DOI:10.1038/nindia.2015.116.
• Navale GR, Rout CS, Gohil KN, Dharne M, Late DJ And Shinde SS. , Oxidative and Membrane stress-mediated antibacterial activity of WS2 and rGO-WS2 Nanosheets, RSC Advances., , (2015), DOI:In Press.
• Navale GR, Dharne M And Shinde SS, Antibiofilm Activity of tert-BuOH Functionalized Ionic Liquids with Methylsulfonate counteranion, RSC Advances., , (2015), DOI:DOI: 10.1039/C5RA12854D.
• Philem DP, Sonalkar VV, Dharne M And Prabhune AA. , Purification and partial characterization of novel Penicillin V acylase from Acinetobacter sp. AP24 – isolated from Loktak Lake; an Indo-Burma biodiversity hotspot, Preparative Biochemistry & Biotechnology., , (2015), DOI:In Press.
• Arvind M. Korwar, Garikapati Vannuruswamy, Mashanipalya G. Jagadeeshaprasad, Ramesha H. Jayaramaiah, Shweta Bhat, Bhaskaran S. Regin, Sureshkumar Ramaswamy, Ashok P. Giri, Viswanathan Mohan, Muthuswamy Balasumbramanyam And Mahesh J. Kulkarni1*, Development of diagnostic fragment ion library for glycated peptides of Human serum albumin: Targeted quantification in prediabetic, diabetic and microalbuminuria plasma by PRM, SWATH and MSE, Molecular and Cellular Proteomics., (in Press), (2015).
• Golegaonkar SB, Tabreza SS, Pandita A, Shalini SA, Jagadeesha Prasad MG, Bansode SB, Gopalan SC, Kulkarni MJ* And and Mukhopadhyay A*. , Rifampicin reduces Advanced Glycation End products and activates DAF-16 to increase life span in Caenorhabditis elegans, Aging Cell., 14(3), 463 - 73 (2015).
• Tiwari S, Bothale M, Kulkarni MJ, Basu R, Basu A, Hasan I And Unnikrishnan AG, Association between Serum Albumin and HbA1c in Asian Indian Subjects, Ind J Endocrinol Metabol., 19(1), 52 - 5 (2015).
• Batkulwar KB, Bansode SB, Patil GV, Godbole RK, Kazi RS, Chinnatambi S, Shanmugam D And Kulkarni MJ*. , Investigation of Phosphoproteome in RAGE signaling. Jan;15(2-3):245-59, Proteomics., 15, 245 - 59 (2015).
• Kolekar YM, Vannuruswamy G, Bansode SB, Santhakumari B, Thulasiram HV And Kulkarni MJ*. , Investigation of Antiglycation Activity of Isoprenaline, RSC Advances., 5, 25051 - 25058 (2015).
• Chinchansure A, Korwar AM And Kulkarni MJ Joshi SP, Recent development of plant products with antiglycation activity: a review, RSC Advances., 5, 31113 - 31138 (2015).
• Bansode SB, Batkulwar KB, Warkad S, Jana A, , Sengupta N And Kulkarni MJ*, Tolbutamide induces conformational change and promotes albumin glycation, RSC Advances., , (2015), DOI:10.1039/C5RA03839A.
• Dinesh Kumar, Sandeep Kumar, Alok K. Verma, , Akanksha Sharma, Anurag Tripathi, Bhushan P. Chaudhari, Surya Kant, , Mukul Das, Swatantra K. Jain And Premendra D. Dwivedi, Hypersensitivity linked to exposure of Broad bean protein(s) in allergic patients and BALB/c mice, Nutrition., 30, 903 - 914 (2014), DOI:10.1016/j.nut.2013.11.024.
• Kumar S, Verma AK, Sharma A, Roy R, Kumar D, Giridhar BH, Tripathi A, Chaudhari BP, Das M, Jain SK And Dwivedi PD, Phaseolin: A 47.5 kDa protein of red kidney bean (Phaseolus vulgaris L.) plays a pivotal role in hypersensitivity induction, International Immunopharmacology., 19, 178 - 190 (2014), DOI:10.1016/j.intimp.2014.01.014.
• Salil Varshney, Kripa Shankar, Muheeb Beg, Vishal M. Balaramnavar, Sunil Kumar Mishra, Pankaj Jagdale , Shishir Srivastava , Yashpal S. Chhonker , Vijai Lakshmi , Bhushan P. Chaudhari , Rabi Shankar Bhatta , Anil Kumar Saxena And Anil Nilkanth Gaikwad, Rohitikine inhibits in vitro adipogenesis arresting mitotic clonal expansion and improves dyslipidemia in vivo, Journal of Lipid Research., 55, 1019 - 1032 (2014), DOI:10.1194/jlr.M039925.
• Gatikrushna Panigrahi, Shashikant Tiwari, Kausar M. Ansari, Rajnish K. Chaturvedi, Vinay K. Khanna, Bhushan P. Chaudhari, Vipin M. Vashistha, S. Raisuddin And Mukul Das, Association between children death and consumption of Cassia occidentalis seeds: Clinical and experimental investigations, Food and Chemical Toxicology., 67, 236 - 248 (2014), DOI:10.1016/j.fct.2014.03.005.
• Sakshi Mishra, Anurag Tripathi, Bhushan P. Chaudhari, Premendra D. Dwivedi, Haushila P. Pandey And Mukul Das, Deoxynivalenol induced mouse skin cell proliferation and inflammation via MAPKs pathway, Toxicology and Applied Pharmacology., 279, 186 - 197 (2014), DOI:10.1016/j.taap.2014.06.003.
• Ankur Gupta, Sumrita Bhat, Pankaj R. Jagdale, Bhushan P.Chaudhari, Las Lidgren, Kailash C.Gupta And Ashok Kumar, Evaluation of three-dimentional chitosan-agarose-gelatin cryogel scaffold for the repair of subchondral cartilage defects: an in vivo study in a rabbit model, Tissue Eng Part A., 20, 3101 - 3111 (2014), DOI:10.1089/ten.tea.2013.0702.
• Ruchi Roy , Dinesh Kumar , Akanksha Sharma , Parul Gupta, Bhushan P. Chaudhari , Anurag Tripathi , Mukul Das And Premendra D. Dwivedi, ZnO nanoparticles induced adjuvant effect via toll-like receptors and 2 Src signaling in Balb/c mice, Toxicology Letters., 230, 421 - 433 (2014), DOI:10.1016/j.toxlet.2014.08.008.
• Alok Kumar Verma , Sandeep Kumar , Akanksha Sharma , Dinesh Kumar , Ruchi Roy, Rinkesh Kumar Gupta, Bhushan P. Chaudhari, B.H. Giridhar, Mukul Das And Premendra D. Dwivedi, Allergic manifestation by black gram (Vigna mungo) proteins in allergic patients, BALB/c mice and RBL-2H3 cells, International Immunopharmacology., 23, 92 - 103 (2014), DOI:10.1016/j.intimp.2014.08.016.
• Akanksha Sharma, Sandeep Kumar, Rinkesh Kumar Gupta, Ruchi Roy, Kriti Gupta, Alok Kumar Verma, Bhushan P. Chaudhari, Mukul Das And Premendra D. Dwivedi, Elucidation of immediate type I reactions in native and GM mustard (Brassica spp.), Food Research International., 64, 810 - 821 (2014), DOI:10.1016/j.foodres.2014.08.014.
• Vivek Mishra, Manjari Mishra, Bhushan P Chaudhari, Raj Khanna And Mukul Das, Argemone Oil and Butter Yellow Induced Toxicity in Hepatic and Extra Hepatic Tissues, Bioenergetics., 3, 1 - 7 (2014), DOI:10.4172/2167-7662.1000111.
• Alok Kumar Verma, Sandeep Kumar, Bhushan P. Chaudhari, Narendra Tuteja, Mukul Das And Premendra D. Dwivedi, Allergenicity Assessment of Genetically-modified Tobacco Expressing Salt Tolerance cbl Gene, Plants food for human nutrition., 69, 209 - 215 (2014), DOI:10.1007/s11130-014-0435-8.
• Koteswara Rao, S.Girisham And S.M.Reddy, Influence of different species of Penicillium and their culture filtrates on seed germination and seedling growth of sorghum, J Biochem Tech., 5, 832 - 837 (2014).
• Shilpa, Penugonda, V. Koteswara Rao And S.Girisham and S.M.Reddy, Factors influence on growth, DON and NIV production by two species of Fusarium isolated from finger millets [Eleusine coracana L.], Int. J. Pharmacy Pharmaceutical Sciences., 6, 312 - 317 (2014).
• Koteswara Rao, V. And S. Girisham , Antimicrobial and DNA damaging activity of Ochratoxin A Extracted from Penicillium species, Int J Pharma Bio Sci., 5, 335 - 341 (2014), DOI:-.
• Priyanka, SR., MV Ramana, G. Phani Kumar, V.Koteswara Rao And H. C. S. , Occurrence and molecular detection of toxigenic Aspergillus species in food, J. Sci. Food Agric., 94, 537 - 543 (2014), DOI:DOI 10.1002/jsfa.6289.
• Kedar B. Batkulwar, Sneha B. Bansode, Gouri V. Patil, Rashmi K. Godbole, Rubina S. Kazi, Subashchandrabose Chinnathambi, Dhanasekaran Shanmugam And Mahesh J. Kulkarni, Investigation of phosphoproteome in RAGE signaling, PROTEOMICS., , (2014), DOI:10.1002/pmic.201400169.
• Kulkarni G, Shetty S, Dharne M And Shouche Y. , Genome sequencing analysis reveals virulence related gene content of Ochrobactrum intermedium strain 229E, a urease positive strain isolated from human gastric niche, FEMS Microbiology Letters., 357, 131 - 135 (2014), DOI:doi:10.1111/1574-6968.12549.
• Bhat S, Mary S, Banarjee R, Giri AP And Kulkarni MJ*. , Immune response to chemically modified proteome, Proteomics Clin Appl., 8 (1-2), 19 - 34 (2014).
• Sacheti P, Patil R, Dube A, Bhonsle H, Thombre D, Marathe S, Vidhate R, Wagh P, Kulkarni M, Rapole S And Gade W, Proteomics of arsenic stress in the gram-positive organism Exiguobacterium sp. PS NCIM 5463, Appl Microbiol Biotechnol., 98(15), 6761 - 73 (2014).
• Bansode SB, Jana A, Batkulwar KB, Warkad S, Joshi RS, Sengupta N* And Kulkarni MJ*. , Molecular Investigations of Protriptyline as a Multi-Target Directed Ligand in Alzheimer's Disease. , Plos One., Aug 20;9(8), e105196 (2014), DOI:doi: 10.1371/journal.pone.0105196.
• Singh P, Ramesha HJ, Sarate P, Thulasiram HV, Kulkarni MJ And Giri AP. PLoS One, Insecticidal potential of defense metabolites from Ocimum kilimandscharicum against Helicoverpa armigera. 2014 Aug 6;9(8):e104377. doi: 10.1371/journal.pone, Plos One., , (2014).
• Mohammad N, Malvi P, Meena AS, Singh SV, Chaube B, Vannuruswamy G, Kulkarni MJ And Bhat MK, Cholesterol depletion by methyl-beta-cyclodextrin augments tamoxifen induced cell death by enhancing its uptake in melanoma, Molecular Cancer., 1;13(1):, 204 (2014).
• Mukherjee S, Jagadeeshaprasad M , Banerjee T, Ghosh S, Biswas M, Dutta S Kulkarni MJ, Patari S And Bandyopadhyay A, Proteomic analysis of human plasma in Chronic Rheumatic Mitral Stenosis reveals proteins involved in the Complement and Coagulation cascade, Clinical Proteomics., 11, 35 (2014), DOI:doi:10.1186/1559-0275-11-35.
• Dhotre SV, Mehetre GT, Dharne MS, Suryawanshi NM And Nagoba BS, Isolation of Streptococcus tigurinus - a novel member of Streptococcus mitis group from a case of periodontitis, FEMS Microbiol Letters., , (2014), DOI:10.1111/1574-6968.12519.
• Ruchira Mukherji, † Anupam Samanta, ‡ Rajith Illathvalappil, ‡ Somak Chowdhury, § Asmita Prabhune, * And 5 and R. Nandini Devi*, Selective Imaging of Quorum Sensing Receptors in Bacteria Using Fluorescent Au Nanocluster Probes Surface Functionalized with Signal Molecules, ACS Appl. Mat., , (2014), DOI:dx.doi.org/10.1021/.
• Ruchira Mukherji, ; Nishant K Varshney, Priyabrata Panigrahi, C.G. Suresh And Asmita Prabhune , A new role for Penicillin Acylases: Quorum Quenching by Kluyvera citrophila Penicillin G Acylase. (, Enzyme Microbial Technology., 56, 1 - 7 (2014).
• Manjari Mishra, Vivek Mishra, Bhushan P. Chaudhari, Vinay K. Khanna, Sanjay Mehrotra, Shakir Ali And Mukul Das, Anomalies in ovary following oral exposure to oxytocin: Mechanistic studies, Reproductive Toxicology., 40, 24 - 34 (2013), DOI:10.1016/j.reprotox.2013.05.004.
• Saba , Somaira Khan , Suhel Parvez , Bhushan Chaudhari, Firoz Ahmad, Sameya Anjum And Sheikh Raisuddin, Ellagic acid attenuates bleomycin and cyclophosphamide-induced pulmonary toxicity in Wistar rats, Food and Chemical Toxicology., 58, 210 - 219 (2013), DOI:10.1016/j.fct.2013.03.046.
• Sandeep Kumar, Akanksha Sharma, Alok K. Verma, B.P. Chaudhari, Mukul Das, S.K. Jain And Premendra D. Dwivedi, Allergenicity potential of red kidney bean (Phaseolus vulgaris L.) proteins in orally treated BALB/c mice and passively sensitized RBL-2H3 cells, Cellular Immunology., 284, 37 - 44 (2013), DOI:10.1016/j.cellimm.2013.07.001.
• Nitin Sagar, Alok K. Pandey, Deepak Gurbani, Kainat Khan, Dhirendra Singh, Bhushan P. Chaudhari, Vivek P. Soni, Naibedya Chattopadhyay, Alok Dhawan And Jayesh R. Bellare, In-Vivo Efficacy of Compliant 3D Nano-Composite in Critical-Size Bone Defect Repair: a Six Month Preclinical Study in Rabbit, PLOS ONE., 8, e77578 (2013), DOI:10.1371/journal.pone.0077578.
• Ruchi Roy, Sandeep Kumar, Alok K. Verma, Akanksha Sharma, Bhushan P. Chaudhari, Anurag Tripathi, Mukul Das And Premendra D. Dwivedi, Zinc oxide nanoparticles provide an adjuvant effect to ovalbumin via a Th2 response in Balb/c mice, International Immunology., 26, 159 - 172 (2013), DOI:10.1093/intimm/dxt053.
• Sandeep Kumar, Alok Kumar Verma, Akanksha Sharma, Dinesh Kumar, Anurag Tripathi, B.P. Chaudhari, Mukul Das, S.K. Jain And Premendra D. Dwivedi, Phytohemagglutinins augment red kidney bean (Phaseolus vulgaris L.) induced allergic manifestations, Journal of proteomics., 93, 50 - 64 (2013), DOI:10.1016/j.jprot.2013.02.003.
• Nivedita M. Jangale, Prasad P. Devarshi, Aarti A. Dubal, Arvindkumar E. Ghule, Soumya J. Koppikar, Subhash L. Bodhankar, Ashok D. Chougale, Mahesh J. Kulkarni And Abhay M. Harsulkar, Dietary flaxseed oil and fish oil modulates expression of antioxidant and inflammatory genes with alleviation of protein glycation status and inflammation in liver of streptozotocin–nicotinamide induced diabetic rats, Food Chem., 141 (1), 187 - 195 (2013).
• Koteswara Rao, V., Ramana MV, Girisham S And Reddy SM, Culture Media and Factors Influencing Ochratoxin A Production by Two Species of Penicillium Isolated from Poultry Feeds, Natl Acad Sci Lett., 36, 101 - 110 (2013), DOI:DOI 10.1007/s40009-012-0096-9.
• Poonam Sacheti, Hemangi Bhonsle, Rajendra Patil, Mahesh J. Kulkarni And Rapole Srikanth and Wasudev Gade , Arsenomics of Exiguobacterium sp. PS (NCIM 5463), RSC Advances., 3(23), 9705 - 9713 (2013).
• Chetan C. Oturkar CC, Othman MA, Kulkarni MJ, Madamwar D And Gawai kR. , Synergistic action of flavin containing NADH dependant azoreductase and cytochrome P450 monooxygenase in azoaromatics mineralization, RSC Adv., 3, 3062 - 70 (2013).
• Bhonsle HS, Korwar AM, Chougale AD Kote SS, Dhande NL, Shelgikar KM And Kulkarni MJ*, Proteomic study reveals downregulation of apolipoprotein A1 in plasma of poorly controlled diabetes: A pilot study. 2013 Feb;7(2):495-8, Mol Med Report., 7(2), 495 - 8 (2013).
• Proteomic profiling and interactome analysis of ER positive/ HER2/neu negative invasive ductal carcinoma of the breast: Towards proteomics biomarkers. Korwar AM, Bhonsle HS, Ghole VS, Gawai KR, Koppikar CB and Kulkarni MJ*, OMICS., 17(1), 27 - 40 (2013).
• Bansode SB, Chougale AD, Joshi RS, Giri AP, Bodhankar SL, Harsulkar AM And Kulkarni MJ*. , Proteomic analysis of protease resistant proteins in the diabetic rat kidney, Mol Cell Proteom., 12 (1), 228 - 36 (2013).
• Kulkarni MJ*, Korwar AM, Mary S, Bhonsle HS And Giri AP. , Glycated proteome: from reaction to intervention, Proteomics Clin Appl., 7(1-2), 155 - 70 (2013).
• Joglekar M, Panaskar S, Chougale A, Kulkarni M And Arvindekar A, A novel mechanism for antiglycative action of limonene through stabilization of protein conformation, Mol Biosyst., 9(10), 2463 - 72 (2013).
• Kesavan SK, Bhat S, Golegaonkar SB, Jagadeeshaprasad MG, Deshmukh AB, Patil HS, Bhosale SD, Shaikh ML, Thulasiram HV, Boppana R And Kulkarni MJ*. , Proteome wide reduction in AGE modification in streptozotocin induced diabetic mice by hydralazine mediated transglycation. , Scientific Reports., 15;3, 2941 (2013), DOI:doi: 10.1038/srep02941.
• Kulkarni G, Dhotre D, Dharne M, Shetty S, Chowdhury S, Misra V, Misra S, Patole M And Shouche Y, Draft genome of Ochrobactrum intermedium strain M86 isolated from non-ulcer dyspeptic individual from India, Gut Pathogens., , (2013), DOI:0.1186/1757-4749-5-7.
• Pooja Singh, Kasturi Joshi, Debanjan Guin And Asmita A. Prabhune, Chemically Conjugated Sophorolipids on CdTe QDs: A Biocompatible photoluminescence Nanocomposite for Theranostic Applications, Royal society of Chemistry, RSC Adv., 3, 22319 - -22325 (2013), DOI:10.1039/C3RA44535F.
• Sharath Balkrishna and Asmita Prabhune , Gamma-Glutamyl Transferases: A Structural, Mechanistic and Physiological Perspective", Frontiers in Biology., , 7984 - 7992 (2013).
• Chidley HG, Kulkarni RS, Pujari K, Giri AP And Gupta VS, Exogenous ethylene treatment alters the volatile profile of Alphonso mango, Food Chemistry., 136, 584 - 595 (2013).
• Bansode SB, Chougale AD, Joshi R, Giri AP, Bodhankar SL, Harsulkar A And Kulkarni MJ , Proteomic analysis of protease resistant proteins in the diabetic rat kidney, Molecular and Cellular Proteomics., 12, 228 - 236 (2013).
• Mishra M, Joshi RS, Gaikwad SM, Gupta VS And Giri AP, Structural-functional insights of single and multi-domain Capsicum annuum protease inhibitors, Biochemical and Biophysical Research Communication., 430, 1060 - 1065 (2013).
• 2. K. Kulkarni, Z. Zhang, L. Chang, J. Yang, P. C. A. da Fonseca And D. Barford , Building a pseudo- atomic model of the anaphase-promoting complex, Acta Crystallogr D Biol Crystallogr., In Press, (2013).
• 1. Ioannis Manolaridis*, Kiran Kulkarni*, Roger B. Dodd, Satoshi Ogasawara, Ziguo Zhang, Ganka Bienva, Nicola O’ Reilly, Sarah J. Hanrahan, Andrew J. Thompson, Nora Cronin And So Iwata and David Barford. (* Equal first author), Mechanism of prenylated CAAX protein processing by the integral membrane protease Rce1, Nature., In Press, (2013).
• 2. Zhang Z, Yang J, Cronin N, Kulkarni K* And Barford D* (* Corresponding authors), The four canonical TPR subunits of human APC/C Form Related Homo-Dimeric Structures and Stack in Parallel to Form a TPR Suprahelixexhibit a conserved mode of dimerisation, J. Mol. Biol., 425, 4236 - 4248 (2013).
• Joshi RS, Jamdhade MD, Sonwane MS And Giri AP, Resistome analysis of Mycobacterium tuberculosis: Identification of aminoglycoside 2’-Nacetyltransferase (AAC) as co-target for drug desigining, Bioinformation., 9, 174 - 181 (2013).
• Mahajan N, Mishra M, Tamhane VA, Gupta VS And Giri AP, Plasticity of protease gene expression in Helicoverpa armigera upon exposure to multi-domain Capsicum annuum protease inhibitor, Biochemical Biophysical Acta., 1830, 3414 - 3420 (2013).
• Kulkarni RS, Pandit S, Chidley HG, Nagel R, Schmidt A, Jonathan G, Pujari K, Giri AP And Gupta VS, Characterization of three novel isoprenyl diphosphate synthases from the terpenoid rich mango fruit, Plant Physiology and Biochemistry., 71, 121 - 131 (2013).
• Chikate YR, Tamhane VA, Joshi RS, Gupta VS And Giri AP, Differential protease activity augments polyphagy in Helicoverpa armigera, InInsect Molecular Biology., 22, 258 - 272 (2013).
• Itkin M, Heinig U, Tzfadia O, Bhide AJ, Shinde B, Cardenas P, Bocobza SE, Unger T, Malitsky S, Finkers R, Tikunov Y, Bovy A, Chikate Y, Singh P, Rogachev I, Beekwilder J, Giri AP And Aharoni A, Biosynthesis of antinutritional alkaloids in Solanaceous crops is mediated by clustered genes, Science., 341, 175 - 179 (2013).
• Alok Kumar Vermaa, Sandeep Kumar, Anurag Tripathi, Bhushan P. Chaudhari, Mukul Das And Premendra D. Dwivedi, Chickpea (Cicer arietinum) proteins induce allergic responses in nasobronchial allergic patients and BALB/c mice, Toxicology Letters., 210, 24 - 33 (2012), DOI:10.1016/j.toxlet.2012.01.011.
• Brijesh Kumar Singh, Madhulika Tripathi, Bhushan P. Chaudhari, Pramod K Pandey And Poonam Kakkar, Natural Terpenes Prevent Mitochondrial Dysfunction, Oxidative Stress and Release of Apoptotic Proteins During Nimesulide-Induced Hepatotoxicity in Rats, PLOS ONE., 7, e34200 (2012), DOI:10.1371/journal.pone.0034200.
• Rahul Kumar, Shamshad Alam, Bhushan P.Chaudhari, Premendra D.Dwivedi, Swatantra K.Jain, Kausar M.Ansari And Mukul Das, Ochratoxin A-induced cell proliferation and tumor promotion in mouse skin by activating the expression of cyclin-D1 and cyclooxygenase-2 through nuclear factor-kappa B and activator protein, Carcinogenesis., 34, 647 - 657 (2012), DOI:10.1093/carcin/bgs368.
• Rahul Kumar, Kausar M. Ansari, Bhushan P. Chaudhari, Alok Dhawan, Premendra D. Dwivedi, Swatantra K. Jain And Mukul Das, Topical Application of Ochratoxin A Causes DNA Damage and Tumor Initiation in Mouse Skin, PLOS ONE., 7, e47280 (2012), DOI:10.1371/journal.pone.0047280.
• Narasimha Rao, K., V.Koteswara Rao, Girisham And S.M.Reddy, Succession of mycotoxigenic fusaria in relation to storage structures, Scientific Publishers., , 516 - 524 (2012).
• S.M.Reddy, S.Girisham And V.Koteswara Rao, Biodiversity in mycotoxigenic fungi. Microbial Diversity and Functions:Edited by D.J. Bagyaraj, K.V.B.R. Tilak and H.K. Kehri, New India Publishing Agency., xviii, 149 - 183 (2012).
• Koteswara Rao, V., M.Venkataramana And S.Girisham and S.M.Reddy, Influence of carbon and nitrogen source on ochratoxin A by two species of Penicillium isolated from poultry feeds, Arch. Phytopathol. Plt. Prot., 45, 1917 - 1927 (2012), DOI:http://dx.doi.org/10.1080/03235408.2012.718221.
• Bhagwat AA, Leow YN, Liu L, Dharne M And Kannan P, Role of anionic charges of periplasmic glucans of Shigella flexneri in overcoming detergent stress, Foodborne Pathog Disease., , (2012), DOI:10.1089/fpd.2011.1090.
• Bhagwat AA, Kannan P, Leow YN, Dharne M And Smith A, Role of anionic charges of osmoregulated periplasmic glucans of Salmonella enterica serovar Typhimurium SL1344 in mice virulence, Archives of Microbiology., , (2012), DOI:10.1007/s00203-012-0791-4.
• AB Pharne, B Santhakumari, AS Ghemud, HK Jain And MJ Kulkarni. , Bioanalytical method development and validation of vildagliptin a novel dipeptidyl peptidase IV inhibitor by RP-HPLC method, Int J Pharm Pharm Sci., 4(3), 119 - 123 (2012).
• Mishra M, Mahajan N, Tamhane VA, Kulkarni MJ, Baldwin IT, Gupta VS And Giri AP, Stress inducible proteinase inhibitor diversity in Capsicum annuum, BMC Plant Biol., 12(1), 217 (2012).
• Bhonsle HS, Korwar AM, Suresh KK, Bhosale SD Bansode SB And Kulkarni MJ*. , 'Zoom in' - A targeted database search for identification of glycation modifications analyzed by untargeted tandem mass spectrometry", Eur J Mass Spectrom., 18 (6), 475 - 481 (2012).
• Korwar AM, Bhonsle HS, Kote SS, Chougale AD And Kulkarni MJ, Analysis of AGE modified proteins and RAGE expression in invasive ductal carcinoma. HbA1c in diabetes, Biochem Biophys Res Comm., 419, 490 - 494 (2012).
• Sheon MS1, Patil GV, Kulkarni VA, Kulkarni MJ*, Joshi SR, Mehendale SS And Giri AP , Dynamic proteome in enigmatic preeclampsia: An account of molecular mechanisms and biomarker discovery, Proteomics Clin. Appl., 6, 1 - 12 (2012).
  (Invited review)
• Coppola*, Chinnathambi Subashchandrabose*, et al. And , Evidence for a role of the rare p.A152T variant in MAPT in increasing the risk for FTD-spectrum and Alzheimer’s disease, (First Author) - Human Molecular Genetics (HMG)., 21(15), 3500 - 3512 (2012), DOI:10.1093/hmg/dds161.
• Jun He*, Kiran Kulkarni*, Paula C.A. da Fonseca, Dasha Krutauz, Michael H. Glickman, David Barford And Edward P. Morris (* Equal first author), The structure of the 26S proteasome subunit Rpn2 reveals its PC repeat domain as closed toroid of two concentric ?-helical rings, Structure., 20, 513 - 521 (2012).
• William C.H. Chao*, Kiran Kulkarni*, Ziguo Zhang, Eric H. Kong And David Barford (* Equal first author), Structure of the mitotic checkpoint complex, Nature., 484, 208 - 213 (2012).
• Sadasivam J*, Chinnathambi Subashchandrabose*, Mandelkow Eva., and Mandelkow And E, Conformations of Microtubule-Associated Protein Tau mapped by fluorescence resonance energy transfer (FRET), First Author, Book Chapter - Methods in Molecular biology (Amyloid Proteins)., 849, 85 - 99 (2012), DOI:10.1007/978-1-61779-551-0_7.
• Daebel V, Chinnathambi Subashchandrabose #, Biernat J, Schwalbe M, Habenstein B, Loquet A, Müller H, Baldus M, Griesinger C, Zweckstetter M, Mandelkow E, Vijayan V And Lange A, Beta - Sheet core of tau paired helical filaments revealed by solid-state NMR, Journal of American Chemical Society (JACS)., 134(34), 13982 - 13989 (2012), DOI:10.1021/ja305470p.
• Syed G. Dastager, Zheng- Liu Qiang, Samir Damare, Shu-Kun Tang, Wen-Jun Li. , Agromyces indicus sp. nov., isolated from mangroves sediment in Chorao Island, Goa, India, Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology., 102, 345 - 352 (2012).
• Krishnamurthi, S., Bhattacharya, A., Schumann, P., Dastager, S.G., Tang, S-K., LI, W-J., Chakrabarti, T, Microbacterium immunditiarum sp. nov., a novel actinobacterium isolated from a landfill surface soil and emended description of the genus Microbacterium, Int J Syst Evol Microbiol., 62, 2187 - 2193 (2012).
• Jayashree Kanrtak and Asmita Prabhune, Characterization of smallest active monomeric lipase from novel Rhizopus strain: Application in transesterification, (2012), Appl BiochemBiotechnol., 166:, 1769– - 1780 (2012).
• Reetika Gupta and Asmita A. Prabhune*, Structural determination and chemical esterification of the sophorolipids produced by Candida bombicola grown on glucose and ?-linolenic acid, Biotechnol Letts., 34:, 701 - -707 (2012).
• Bhonsle HS, Korwar AM, Kote SS, Golegaonkar SB, Chougale AD, Shaik ML, Dh, e NL, Giri AP, Shelgikar KM, Boppana R And Kulkarni MJ, Low plasma albumin levels are associated with increased plasma protein glycation and HbA1c in diabetes, J Proteome Res., 11, 1391 - 1396 (2012).
• Pratibha Srivastava , Hema N. Raut , Renuka S. Wagh , Hemalata M. Puntambekar And Kulkarni MJ, Purification and characterization of an antioxidant protein (16 kDa) from Terminalia chebula fruit, Food Chemistry ., 131, 141 - 148 (2012).
• Chougale AD, Bhat SP, Bhujbal SV, Zambare MR, Puntambekar S, Somani RS, Boppana R, Giri AP And Kulkarni MJ, Proteomic Analysis of Glycated Proteins from Streptozotocin-Induced Diabetic Rat Kidney, Mol Biotechnol., 50, 28 - 38 (2012).
• R. K. Sreejith, C. G. Suresh, S. H. Bhosale, Varsha Bhavanani, Avinash Kumar, S. M. Gaikwad And J. K. Pal, Conformational transitions of the catalytic domain of heme-regulated eukaryotic initiation factor 2, a key translational regulatory molecule. J. Fluoresc., 22, 431 - 441 (2012).
• Nishant Kumar Varshney, R. Suresh Kumar, Zoya Ignatova, Asmita Prabhune, Archana Pundle, Eleanor Dodson And C. G. Suresh , Crystallization and X-ray crystal structure analysis of a thermostable penicillin G acylase from Alcaligenes faecalis, Acta Crystallogr., F68, 273 - 277 (2012).
• ?L.Satyanarayana, S. M. Gaikwad, H. Balakrishnan And C. G. Suresh, Crystal structure and fluorescence analysis of alkaline thermostable xylanase from Bacillus sp. (NCL 87-6-10), Prot Pept Lett., in press., , (2012).
• Reid J. A, Vermont J. S, Cotton A. J, Harris D, Hill-Cawthorne A. G And Ko, Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy, PLOS Pathogens., 8(3):e1002567, (2012).
• Magarinos MP, Carmona SJ, Crowther GJ, Ralph SA, Roos DS, Shanmugam D And Van Voorhis WC, Aguero F. TDR Targets: a chemogenomics resource for neglected diseases, Nuc. Acid Res. 40:D1118-27. ., , (2012).
• Shanmugam D, Ralph SA, Carmona SJ, Crowther GJ, Roos DS And Ferna, Integrating and mining helminth genomes to discover and prioritize novel therapeutic targets. (2012). In Press ? ? titled Chemo- and Immuno-therapeutic advances for treatment and control of helminthic infections. , Wiley Book Series (Vol 4) on ?Drug Discovery in Infectious Diseases., , (2012).
• Shilpa, Penugonda, V. Koteswara Rao And S.Girisham and S.M.Reddy, Natural incidence of fusarial mycotoxins in Finger millet (Eleusine coracana L.) of A.P, India, Asiatic. J. Biotechnol. Resor., 2, 392 - 402 (2011), DOI:0976-4992/AJOBR/$0.76-doi:03.2011/AJOBR-2011/02(04)/392-402.
• Koteswara Rao, V., P.Shilpa, S.Girisham And S.M.Reddy , Incidence of Mycotoxigenic Penicillia in Feeds of A.P, India, Int. J. Biotechnol. Mol. Biol Res., 2, 46 - 50 (2011).
• Gupta AK, Dharne MS, Rangrez AY, Verma P, Ghate HV, Rohde M, Patole MS And Shouche YS, Ignatzschineria indica sp. nov. and Ignatzschineria ureiclastica sp. nov., isolated from adult flesh flies (Diptera: Sarcophagidae), Int J Syst Evol Microbiol., , (2011), DOI:0.1099/ijs.0.018622-0.
• 7. Thamotharan S, Karthikeyan T, Kulkarni KA, Shetty KN, Surolia A, Vijayan M And Suguna K. , Modification of the sugar specificity of a plant lectin: structural studies on a point mutant of Erythrina corallodendron lectin, Acta Crystallogr D Biol Crystallogr., 67, 218 - 227 (2011).
• 6. Kulkarni K, Yang J, Zhang Z And Barford D. , Multiple factors confer specific Cdc42 and Rac protein activation by dedicator of cytokinesis (DOCK) nucleotide exchange factors, J. Biol. Chem., 286, 25341 - 25351 (2011).
• 5. Jing Yang, Kiran Kulkarni, Ioannis Manolaridis, Ziguo Zhang, Roger B. Dodd, Corine Mas-Droux And David Barford , Crystal structure of ICMT reveals the mechanism of CAAX motif postprenyl modification by an integral membrane carboxyl methyltransferase, Mol. Cell., 44, 997 - 1004 (2011).
• Shkumatov, A.V*., Chinnathambi Subashchandrabose*., Mandelkow, E., and Svergun And D.I, Structural memory of natively unfolded Tau protein detected by small-angle X-ray scattering (SAXS), First Author, Proteins., 79, 2122 - 2131 (2011), DOI:10.1002/prot.23033.
• Stefan B , Marco DM , Chinnathambi Subashchandrabose, Jacek B, Christian Griesinger , Eckhard Mandelkow And and Markus Zweckstetter , The Dynamic Structure of Filamentous Tau, Angewandte Chemistry, International Edition., 50, 11520 - 11524 (2011), DOI:10.1002/anie.201105493.
• Syed G Dastager, Deepa C.K, Wen-Jun Li, Shu-Kun Tang, Ashok Pandey, Paracoccus niistensis sp. nov., isolated from forest soil, India, Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology., 99(3), 501 - 506 (2011).
• Syed G Dastager, C.K. Deepa, Ashok Pandey. , Plant growth promoting potential of Pontibacter niistensis in cowpea (Vigna unguiculata (L.) Walp.), Applied Soil Ecology., 49, 250 - 255 (2011).
• Suresh KK, Bhosale SD, Thulasiram HV And Kulkarni MJ, Comparative and chemical proteomic approaches reveal gatifloxacin deregulates enzymes involved in glucose metabolism, J Toxicol Sci. ., 36(6), 787 - 796 (2011).
• Urvashi Sharma And C. G. Suresh , Purification, crystallization and X-ray characterization of a Kunitz-type trypsin inhibitor protein from the seeds of chickpea (Cicer arietinum), Acta Crystallogr., F67, 714 - 717 (2011).
• Ranu Sharma, Ruby, B.M. Khan And C.G. Suresh , In Silico substrate specificity in bmgt1 and bmgt2 genes of Bacopa monniera glycosyltransferases Online Journal of Bioinformatics, 12(2), 413 - 430 (2011).
• Coyne S. R, Hannick L, Shanmugam D, Hostetler B. J, Brami D, Joardar S. V, Johnson J, Radune D, Singh I, Kumar U, Saier M, Wang Y, Cai H, Gu J, Mather W. M, Vaidya B. A, Wilkes E. D, Rajagopalan V, Asai J. D, Pearson G. C, Findly C. R, Dickerson W. H, Badger J, Wu M, Martens C, Van de Peer Y, Roos S. D, Cassidy- Hanley M. D And Clark G. T. , Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free- living relatives and a host species: insights into adoption of a parasitic lifestyle and prospects for disease control. , Genome Biology. 12:R100. ., , (2011).
• Fern, ez Robledo JA, Caler E, Matsuzaki M, Keeling PJ, Shanmugam D, Roos DS And Vasta GR. , The search for the missing link: A relic plastid in Perkinsus, Int. J. Parasitol., 41(12), 1217 - 29 (2011).
• Fischer S, Brunk P. B, Chen F, Gao X, Iodice B. J, Shanmugam D, Roos S. D And Stoeckert J. C, Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups, Current Protocols in Bioinformatics. Chapter 6; Unit 6.12., , (2011).
• Jaffe EK, Shanmugam D, Gardberg A, Dieterich S, Sankaran B, Stewart L, Myler P And Roos DS, Crystal structure of Toxoplasma gondii Porphobilinogen synthase: Insights on octameric structure and porphobilinogen formation, J. Biol. Chem., 286(17), 15298 - 307 (2011).
• Liu L, Dharne M, Kannan P, Smith A, Meng J, Fan M, Boren TL, Ranallo RT And Bhagwat AA, Osmoregulated periplasmic glucans synthesis gene family of Shigella flexneri, Archives of Microbiology., , (2010), DOI:doi: 10.1007/s00203-009-0538-z.
• Zhang Z, Kulkarni K, Hanrahan SJ, Thompson AJ And Barford D, The APC/C subunit Cdc16/Cut9 is a contiguous tetratricopeptide repeat superhelix with a homo-dimer interface similar to Cdc27, EMBOJ., 29, 3733 - 3744 (2010).
• Wegmann, S., Jung, Y.J., Chinnathambi Subashchandrabose#., Mandelkow, E.M., Mandelkow, E., and Muller And D.J, Human Tau isoforms assemble into ribbon-like fibrils that display polymorphic structure and stability, COVER PAGE ARTICLE - Journal of Biological Chemistry (JBC)., 285, 27302 - 27313 (2010), DOI:10.1074/jbc.M110.145318.
• Mishra M, Tamhane VA, Kh, elwal N, Kulkarni MJ, Gupta VS And Giri AP. , Interaction of recombinant CanPIs with Helicoverpa armigera gut proteases reveals their processing patterns, stability and efficiency, .Proteomics., 10(15), 2845 - 2857 (2010).
  Aug
• Golegaonkar SB, Bhonsle HS, Boppana R And Kulkarni MJ, Discovery of rifampicin as a new anti-glycating compound by matrix-assisted laser desorption / ionization mass spectrometry-based insulin glycation assay, Eur J Mass Spectrom (Chichester, Eng)., 16(2), 221 - 226 (2010).
• Bahl A, Davis PH, Behnke M, Dzierszinski F, Jagalur M, Chen F, Shanmugam D, White MW, Kulp D And Roos DS, A novel multi-functional oligonucleotide microarray for Toxoplasma gondii , BMC Genomics., 0.877083333333, (2010).
• Crowther GJ, Shanmugam D, Carmona SJ, Doyle MA, Hertz-Fowler C, Berriman M, Nwaka S, Ralph SA, Roos DS And Van Voorhis WC , Aguero F. Identification of attractive drug targets in neglected-disease pathogens using an in silico approach. , PLOS Neglected Tropical Diseases. ., 4(8):e804. Doi:10.1371 /journal.pntd.0000804. , (2010).
• Shanmugam D, Wu B, Ursula Ramirez, Jaffe E And Roos DS. , Plastid associated porphobilinogen synthase from Toxoplasma gondii: Kinetic and structural properties validate therapeutic potential, J. Biol. Chem., 285(29), 22122 - 31 (2010).
• Bhagwat AA, Jun W, Liu L, Kannan P, Dharne M, Pheh B, Tall BD, Kothary MH, Gross KC, Angle S, Meng J And Smith A, Osmoregulated periplasmic glucans of Salmonella enterica serovar Typhimurium are required for optimal virulence in mice, Microbiology., , (2009), DOI:10.1099/mic.0.023747-0.
• Kannan P, Dharne M, Smith A, Karns J And Bhagwat AA, Motility revertants of opgGH mutants of Salmonella enterica serovar Typhimurium remain defective in mice virulence, Current Microbiology., , (2009), DOI:10.1007/s00284-009-9486-8.
• Pappachan, A., Chinnathambi Subashchandrabose#, Satheshkumar, P.S., Savithri, H.S., and Murthy And M.R, A single point mutation disrupts the capsid assembly in Sesbania Mosaic Virus resulting in a stable isolated dimer, COVER PAGE ARTICLE - Virology., 392, 215 - 221 (2009), DOI:10.1016/j.virol.2009.06.047.
• Mahadik MV, Kulkarni MJ And Dhaneshwar SR, LC-UV and LC-MS evaluation of stress degradation behaviour of tenatoprazole, Journal of Pharmaceutical and Biomedical Analysis., 50, 787 - 793 (2009).
• Dhaneshwar SR, Mahadik MV And Kulkarni MJ, Column liquid chromatography-ultraviolet and column liquid chromatography/mass spectrometry evaluation of stress degradation behavior of escitalopram oxalate, J AOAC Int., 92(1), 138 - 147 (2009).
  Jan-Feb
• U. V. Katre And C. G. Suresh , Features of homotetrameric molecular association in protein crystals, Acta Crystallogr., D65, 1 - 10 (2009).
• Pappachan, A., Chinnathambi Subashchandrabose#, Satheshkumar, P.S., Savithri, H.S., and Murthy And M.R, Structure of recombinant capsids formed by the beta-annulus deletion mutant rCP (Delta48-59) of Sesbania mosaic virus, COVER PAGE ARTICLE - Virology., 375, 190 - 196 (2008), DOI:10.1016/j.virol.2008.01.023.
• Dharne MS, Misra SP, Misra V, Dwivedi M, Patole MS And Shouche YS, Isolation of urease-positive Ochrobactrum intermedium in the stomach of a non-ulcer dyspeptic patient from north India, J Microbiol Immunol Infect., , (2008).
• Bacterial synthesis of copper/copper oxide nanoparticles, J Nanosci Nanotechnol., , (2008).
• Kulkarni KA, Katiyar S, Surolia A, Vijayan M And Suguna K, Crystal structure of basic winged bean lectin complexed with alpha Gal containing disaccharide with different linkages, Acta Crystallogr D Biol Crystallogr., 64, 730 - 737 (2008).
• Jeganathan, S., Hascher, A., Chinnathambi Subashchandrabose, Biernat, J., Mandelkow, E.M., and Mandelkow And E, Proline-directed pseudo-phosphorylation at AT8 and PHF1 epitopes induces a compaction of the paperclip folding of Tau and generates a pathological (MC-1) conformation, Journal of Biological Chemistry (JBC)., 283, 32066 - 32076 (2008), DOI:10.1074/jbc.M805300200.
• Bhonsle HS, Singh SK, Srivastava G, Boppana R And Kulkarni MJ, Albumin competitively inhibits glycation of less abundant proteins, Protein Pept Lett., 15(7), 663 - 667 (2008).
• MS. Shabab M, Kulkarni MJ And Khan, Study of papain-cystatin interaction by intensity fading MALDI-TOF, MI. Protein J., 27(1), 7 - 12 (2008).
  Jan
• Aguero F, Al-Lazikani B, Aslett M, Berriman M, Buckner FS, Campbell RK, Carmona S, Carruthers IM, Chan AWE, Chen F, Crowther GJ, Hertz-Fowler C, Hopkins AL, McAllister G, Nwaka S, Overington JP, Pain A, Paolini GV, Pieper U, Ralph SA, Riechers A, Roos DS, Sali A, Shanmugam D, Suzuki T, Van Voorhis WC And Verlinde CL, Genomic-scale Prioritization of Drug Targets: the TDR Targets database, Nat. Rev. Drug Discov. ., 7, 900 - 907 (2008).
• Kulkarni KA, Katiyar S, Surolia A, Vijayan M And Suguna K, Generation of blood group specificity: New insights from structural studies on the complexes of A – and B – reactive saccharides with basic winged bean agglutinin, Proteins., 68, 762 - 769 (2007).
• Bar C, Patil R, Doshi J, Kulkarni MJ And Gade WN, Characterization of the proteins of bacterial strain isolated from contaminated site involved in heavy metal resistance--a proteomic approach, J Biotechnol., 128(3), 444 - 451 (2007).
  2007 Feb 20