Research Group Publications

• Mudita Shukla And Ram Rup Sarkar*, Differential cellular communication in tumor immune microenvironment during early and advanced stages of lung adenocarcinoma, Molecular Genetics and Genomics., Volume 299, article number 100, (2024), DOI:https://doi.org/10.1007/s00438-024-02193-8.
• Anirudh Murali And Ram Rup Sarkar*, Dynamic cellular responses to gravitational forces: Exploring the impact on white blood cell(s), Biomicrofluidics., Volume 18, Issue 5, (2024), DOI:https://doi.org/10.1063/5.0216617.
• Mudita Shukla, Rupa Bhowmick, Piyali Ganguli And Ram Rup Sarkar*, Metabolic reprogramming and signalling cross-talks in tumour–immune interaction: a system-level exploration, Royal Society Open Science., Volume 11, Issue 3, (2024), DOI:https://doi.org/10.1098/rsos.231574.
• Anirudh Murali And Ram Rup Sarkar*, Gravitational effect on the cell in bio-fluid suspension, bioRxiv., , (2024), DOI:https://www.biorxiv.org/content/10.1101/2024.04.22.590537v2.
• Anirudh Murali And Ram Rup Sarkar*, Mechano-immunology in microgravity, Life Sciences in Space Research., Volume 37, 50 - 64 (2023), DOI:10.1016/j.lssr.2023.03.001.
• G.K. Patra*, Kantha Rao Bhimala, Ashapurna Marndi, Saikat Chowdhury, Jarjish Rahaman, Sutanu Nandi, Ram Rup Sarkar, K.C. Gouda, K.V. Ramesha, Rajesh P. Barnwal, Siddhartha Raj And Anil Saini, Deep learning methods for scientific and industrial research, In: Venu Govindaraju. Arni S.R. Srinivasa Rao, C.R. Rao (eds) Handbook of Statistics (Deep Learning), Volume 48, Academic Press, Elsevier, USA, Print ISBN 978-0-443-18430-7., 48, 107 - 168 (2023), DOI:10.1016/bs.host.2022.12.002.
• Sutanu Nandi, Gauri Panditrao, Piyali Ganguli And Ram Rup Sarkar, PRESGENE: A web server for PRediction of ESsential GENE using integrative machine learning strategies, BioRxiv., , (2022), DOI:https://doi.org/10.1101/2022.11.25.517801.
• Rupa Bhowmick And Ram Rup Sarkar, Identification of potential microRNAs regulating metabolic plasticity and cellular phenotypes in glioblastoma, Molecular Genetics and Genomics., , (2022), DOI:https://doi.org/10.1007/s00438-022-01966-3.
• Priyanka Gawade, Sutanu Nandi, Chandrakala Meena And Ram Rup Sarkar*, Artificial Intelligence and Machine Learning Techniques using Omics Data for Cancer Diagnosis and Treatment, In: Singh S. (eds) Systems Biomedicine Approaches in Cancer Research, Springer, Singapore., Print ISBN 978-981-19-1952-7, 23 - 50 (2022), DOI:10.1007/978-981-19-1953-4.
• Gauri Panditrao, Rupa Bhowmick, Chandrakala Meena And Ram Rup Sarkar*, Emerging Landscape of Molecular Interaction Networks: Opportunities, Challenges and Prospects, Journal of Biosciences., 47(24), (2022), DOI:10.1007/s12038-022-00253-y.
• Gauri Panditrao, Piyali Ganguli And Ram Rup Sarkar*, Delineating infection strategies of Leishmania donovani secretory proteins in Human through Host-Pathogen protein Interactome prediction, Pathogens and Disease., 79(8):ftab051, (2021), DOI:10.1093/femspd/ftab051.
• Malobika Chakraborty#, Piyali Ganguli#, Manikanta Murahari, Ram Rup Sarkar*, Godefridus J. Peters And Mayur C Yergiri*, Study of combinatorial drug synergy of novel Acridone derivatives with Temozolomide using in-silico and in-vitro methods in the treatment of drug-resistant Glioma, Frontiers in Oncology., 11, 625899 (2021), DOI:10.3389/fonc.2021.625899.
  [# Equal First Author]
• A Mahanta†, P Ganguli†, P Barah, RR Sarkar, N Sarmah, S Phukan, M Bora And S Barua* , Integrative Approaches to Understand the Mastery in Manipulation of Host Cytokine Networks by Protozoan Parasites with Emphasis on Plasmodium and Leishmania Species. In: Morrot A (eds) Immune evasion strategies in protozoan-host interactions, Frontiers, Lausanne: Frontiers Media SA., Print ISBN 978-2-88966-294-4, 478 - 485 (2020), DOI:10.3389/978-2-88966-294-4.
• Rupa Bhowmick, Piyali Ganguli And Ram Rup Sarkar*, T-cell activation and differentiation: Role of signaling and metabolic crosstalk. In: Singh S. (eds) Systems and Synthetic Immunology, Springer, Singapore., Print ISBN 978-981-15-3349-5, 153 - 182 (2020), DOI:10.1007/978-981-15-3350-1_6.
• Rupa Bhowmick And Ram Rup Sarkar*, Differential suitability of reactive oxygen species and the role of glutathione in regulating paradoxical behavior in gliomas: A mathematical perspective, PLoS ONE., 15(6), e0235204 (2020), DOI:10.1371/journal.pone.0235204.
• Kshitij Patil, Anirudh Murali, Piyali Ganguli, Sutanu Nandi And Ram Rup Sarkar* , On the Temporal Analysis of COVID - 19 Pandemic and Prediction of R0, Research Square (Preprint)., , (2020), DOI:10.21203/rs.3.rs-40499/v1.
• Kshitij Patil, Anirudh Murali, Piyali Ganguli, Sutanu Nandi And Ram Rup Sarkar* , Temporal Analysis of COVID - 19 Pandemic in India and Prediction of R0, Research Square (Preprint)., , (2020), DOI:10.21203/rs.3.rs-40655/v1.
• Sutanu Nandi, Piyali Ganguli And Ram Rup Sarkar*, Essential gene prediction using limited gene essentiality information–An integrative semisupervised machine learning strategy, PLoS ONE., 15(11), e0242943 (2020), DOI:10.1371/journal.pone.0242943.
• Rochi Saurabh, Sutanu Nandi, Noopur Sinha, Mudita Shukla And Ram Rup Sarkar*, Prediction of survival rate and effect of drugs on cancer patients with somatic mutations of genes - An AI based approach, Chemical Biology & Drug Design., 96, 1005 - 1019 (2020), DOI:10.1111/cbdd.13668.
• Noopur Sinha, Saikat Chowdhury And Ram Rup Sarkar*, Molecular basis of drug resistance in Smoothened receptor: An in silico study of protein resistivity and specificity, PROTEINS: Structure, Function, and Bioinformatics., 88(3), 514 - 526 (2019), DOI:10.1002/prot.25830.
• Saikat Chowdhury And Ram Rup Sarkar*, Exploring Notch Pathway to Elucidate Phenotypic Plasticity and Intra-tumor Heterogeneity in Gliomas, Scientific Reports (Nature)., 9, 9488 (2019), DOI:10.1038/s41598-019-45892-8.
• Swarnendu Banerjee, Ram Rup Sarkar And Joydev Chattopadhyay*, Effect of copper contamination on zooplankton epidemics, Journal of Theoretical Biology., 469, 61 - 74 (2019), DOI:10.1016/j.jtbi.2019.02.016.
• Anusree Mahanta, Piyali Ganguli, Pankaj Barah, Ram Rup Sarkar, Neelanjana Sarmah, Saurav Phukan, Mayuri Bora And Shashi Baruah*, Integrative Approaches to Understand the Mastery in Manipulation of Host Cytokine Networks by Protozoan Parasites with Emphasis on Plasmodium and Leishmania Species, Frontiers in Immunology., 9:296, (2018), DOI:10.3389/fimmu.2018.00296.
• Abhishek Subramanian And Ram Rup Sarkar*, Computational Techniques for a Comprehensive Understanding of Different Genotype-Phenotype Factors in Biological Systems and Their Applications. In: Singh S. (eds) Synthetic Biology: Omics Tools and Their Applications, Springer, Singapore., Print ISBN: 978-981-10-8692-2, 113 - 139 (2018), DOI:10.1007/978-981-10-8693-9_8.
• Saikat Chowdhury, Noopur Sinha, Piyali Ganguli, Rupa Bhowmick, Vidhi Singh, Sutanu Nandi And Ram Rup Sarkar*, BIOPYDB: A Dynamic Human Cell Specific Biochemical Pathway Database with Advanced Computational Analyses Platform, Journal of Integrative Bioinformatics., 15(3), 20170072 (2018), DOI:10.1515/jib-2017-0072.
• Abhishek Subramanian And Ram Rup Sarkar*, Perspectives on Leishmania species and stage-specific adaptive mechanisms, Trends in Parasitology., 34(12), 1068 - 1081 (2018), DOI:10.1016/j.pt.2018.09.004.
• Noopur Sinha, Saikat Chowdhury And Ram Rup Sarkar*, Deciphering Structural Stability and Binding Mechanisms of Potential Antagonists with Smoothened Protein, Journal of Biomolecular Structure and Dynamics., 36(11), 2917 - 2937 (2018), DOI:10.1080/07391102.2017.1372310.
• Samik Bose, Diksha Dhawan, Sutanu Nandi, Ram Rup Sarkar And Debashree Ghosh*, Machine Learning Prediction of Interaction Energy in Rigid Water Clusters, Physical Chemistry Chemical Physics., 20, 22987 - 22996 (2018), DOI:10.1039/C8CP03138J.
• Piyali Ganguli And Ram Rup Sarkar*, Exploring Immuno-regulatory mechanisms in the Tumor microenvironment: Model and design of protocols for Cancer remission, PLoS ONE., 13(9), e0203030 (2018), DOI:10.1371/journal.pone.0203030.
• Abhishek Subramanian And Ram Rup Sarkar*, Evolutionary Perspectives of Genotype–Phenotype Factors in Leishmania Metabolism, Journal of Molecular Evolution., 86(7), 443 - 456 (2018), DOI:https://doi.org/10.1007/s00239-018-9857-5.
• Ram Rup Sarkar* And Chandrajit Chatterjee, Application of different Time Series Models on Epidemiological Data - Comparison and Predictions for Malaria Prevalence, SM Journal of Biometrics & Biostatistics., 2(4), 1022 (2017).
• Swarnendu Banerjee, Abhishek Subramanian, Joydev Chattopadhyay And Ram Rup Sarkar*, Exploring the role of GS-GOGAT cycle in microcystin synthesis and regulation – a model based analysis, Molecular Biosystems., 13, 2603 (2017), DOI:10.1039/C7MB00342K.
• Abhishek Subramanian, Ram Rup Sarkar And Prabhakar Ingle, Metabolic Adaptations of Leishmania parasite: a new insight, Chronicle Pharmabiz., October 19, 59 - 60 (2017).
• Abhishek Subramanian And Ram Rup Sarkar*, Revealing the mystery of metabolic adaptations using a genome scale model of Leishmania infantum, Scientific Reports (Nature)., 7, 10262 (2017), DOI:10.1038/s41598-017-10743-x.
• Rupa Bhowmick, Noopur Sinha And Ram Rup Sarkar*, An in-silico perspective towards target ability of available drugs in infectious disease treatment: a possible strategy, Journal of Bioinformatics and Genomics., 2(4), Aug 2017 (2017), DOI:http://dx.doi.org/10.18454/jbg.2017.2.4.1.
• Sutanu Nandi, Abhishek Subramanian And Ram Rup Sarkar*, An integrative machine learning strategy for improved prediction of essential genes in Escherichia coli metabolism using flux-coupled features, Molecular Biosystems., 13, 1584 - 1596 (2017), DOI:10.1039/C7MB00234C.
• Santanu Biswas, Abhishek Subramanian, Ibrahim M. ELMojtaba, Joydev Chattopadhyay And Ram Rup Sarkar*, Optimal combinations of control strategies and cost-effective analysis for visceral leishmaniasis disease transmission, PLoS ONE., 12(2), e0172465 (2017), DOI:10.1371/journal.pone.0172465.
• Ram Rup Sarkar*, Editorial: The Big Data Deluge in Biology: Challenges and Solutions, Journal of Informatics and Data Mining., 1(2), 14 (2016), DOI:10.4172/2472-1956.100014.
  Editorial
• Abhishek Subramanian And Ram Rup Sarkar*, Network Structure and Enzymatic Evolution in Leishmania Metabolism: A Computational Study, Proceedings of the International Symposium on Mathematical and Computational Biology-BIOMAT 2015., World Scientific, ISBN: 978-981-3141-90-2, 1 - 20 (2016), DOI:10.1142/9789813141919_0001.
  Edited by: Rubem P Mondaini
• Noopur Sinha, Saikat Chowdhury And Ram Rup Sarkar*, Structural Insight of NICD-MAML Interactions: Virtual screening, Docking and Molecular Dynamics Study for Identification of Potential Inhibitor, Letters in Drug Design & Discovery., 13(4), 301 - 313 (2016), DOI:10.2174/1570180812666150819003634.
• Abhishek Subramanian And Ram Rup Sarkar*, Dynamics of GLI Regulation and Strategy to Control Cancerous Situation: Hedgehog Signaling Pathway Revisited, Journal of Biological Systems., 23(4), 681 - 719 (2015), DOI:10.1142/S0218339015500333.
• Piyali Ganguli, Saikat Chowdhury, Shomeek Chowdhury And Ram Rup Sarkar*, Identification of Th1/Th2 regulatory switch to promote healing response during Leishmaniasis: a computational approach, EURASIP Journal on Bioinformatics and Systems Biology., 2015:13, (2015), DOI:10.1186/s13637-015-0032-7.
• Rupa Bhowmick, Abhishek Subramanian And Ram Rup Sarkar*, Exploring the differences in metabolic behavior of astrocyte and glioblastoma: A flux balance analysis approach, Systems and Synthetic Biology., 9, 159 - 177 (2015), DOI:10.1007/s11693-015-9183-9.
• Piyali Ganguli, Saikat Chowdhury, Rupa Bhowmick And Ram Rup Sarkar*, Temporal Protein Expression Pattern in Intracellular Signaling Cascade during T-cell Activation: A Computational Study, Journal of Bioscience., 40(4), 769 - 789 (2015), DOI:10.1007/s12038-015-9561-1.
• Abhishek Subramanian, Vidhi Singh And Ram Rup Sarkar*, Understanding Visceral Leishmaniasis Disease Transmission and its Control - A study based on Mathematical Modelling, Mathematics., 3, 913 - 944 (2015), DOI:10.3390/math3030913.
  This article belongs to the Special Issue Optimal Control and Management of Infectious Diseases
• Abhishek Subramanian, Jitesh Jhawar And Ram Rup Sarkar*, Dissecting Leishmania infantum energy metabolism – A systems perspective, PLoS ONE., 10(9), e0137976 (2015), DOI:10.1371/journal.pone.0137976.
• Abhishek Subramanian And Ram Rup Sarkar*, Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions, Genomics., 106, 232 - 241 (2015), DOI:10.1016/j.ygeno.2015.05.009.
• Abhishek Subramanian And Ram Rup Sarkar*, Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids, Data in Brief., 4, 269 - 272 (2015), DOI:10.1016/j.dib.2015.06.003.
• Saikat Chowdhury And Ram Rup Sarkar*, Comparison of Human Cell Signaling Pathway Databases - Evolution, Drawbacks and Challenges, DATABASE The Journal of Biological Databases and Curation (Oxford University Press)., 2015: bau126, (2015), DOI:10.1093/database/bau126.
• Saikat Chowdhury And Ram Rup Sarkar* , Drug Targets and Biomarker Identification from Computational Study of Human Notch Signaling Pathway, Journal of Clinical and Experimental Pharmacology., 3:4, 137 (2013), DOI:10.4172/2161-1459.1000137.
• Sandip Mandal, Somdatta Sinha And Ram Rup Sarkar*, A Realistic Host-Vector Transmission Model for Describing Malaria Prevalence Pattern, Bulletin of Mathematical Biology., 75, 2499 - 2528 (2013), DOI:10.1007/s11538-013-9905-7.
• Saikat Chowdhury, Rachana N. Pradhan And Ram Rup Sarkar*, Structural and Logical Analysis of a comprehensive Hedgehog Signaling Pathway to identify alternative drug targets for Glioma, Colon and Pancreatic Cancer, PLoS ONE., 8(7), e69132 (2013), DOI:10.1371/journal.pone.0069132.
• Ram Rup Sarkar, R. Maithreye And Somdatta Sinha, Design of regulation and dynamics in simple biochemical pathways, Journal of Mathematical Biology., 63, 283 - 307 (2011), DOI:10.1007/s00285-010-0375-3.
• Sandip Mandal, Ram Rup Sarkar And Somdatta Sinha, Mathematical models of malaria - a review, Malaria Journal., 10, 202 (2011), DOI:10.1186/1475-2875-10-202.
  Highly accessed
• Sayantani Basu Roy, Ram Rup Sarkar* And Somdatta Sinha, Theoretical Investigation of Malaria Prevalence in two Indian Cities using the Response Surface Method, Malaria Journal., , (2011), DOI:10:301.
• Anette Stauch, Ram Rup Sarkar, Albert Picado, Bart Ostyn, Shyam Sundar, Suman Rijal, Marleen Boelaert, Jean-Claude Dujardin And Hans-Peter Duerr , Visceral Leishmaniasis in the Indian Subcontinent: Modelling Epidemiology and Control, PLoS Neglected Tropical Diseases., 55, 11 - 11 (2011), DOI:10.1371/journal.pntd.0001405.
• S. Bhattacharyya And R. R. Sarkar*, Effect of migration on Malaria Incidence under environmental variability-a model based approach, Nonlinear Phenomena in Medical and Biological Sciences: Proceedings of the Fifth National Conference on Nonlinear Systems and Dynamics., , (2009).
  NCNSD-2009
• R.R. Sarkar* And M Rahuman Sheriff, Mathematical modeling of T-cell Signalling network and cancer, Proceedings of the Symposium “Integrating Physics, Chemistry, Mathematics and Biology to Understand Living Systems”., , 99 - 116 (2009).
  Eds. J. Basu, M Kundu and I. Bose, Bose Institute, Kolkata.
• Ram Rup Sarkar* And M. Rahuman Sheriff, Signalling Networks of T-Cell – a study based on Logical Steady State Analysis, Proceedings of the International Workshop on “Physics in Biology: A Synergy”., , 57 - 71 (2009).
  Eds. P Anantha Lakshmi and V. Srivastava), Department of Physics, University of Hyderabad (Allied Publishers, ISBN 978-81-8424-576-9)
• C. Chatterjee And R.R. Sarkar*, Multi-step Polynomial Regression Method to Model and Forecast Malaria Incidence, PLoS ONE., 4(3), e4726 (2009), DOI:10.1371/journal.pone.0004726.
• S. Banerjee And R. R. Sarkar*, Delay induced model for tumor-immune interaction and control of malignant tumor growth, BioSystems., 91, 268 - 288 (2008), DOI:Elsevier Science.
• R. Maithreye, R.R. Sarkar, V.K. Parnaik And S. Sinha, Delay-Induced Transient Increase and Heterogeneity in Gene Expression in Negatively Auto-regulated Gene Circuits, PLoS ONE., 3, 8 - 8 (2008), DOI:e2972.
• N. Bairagi, R.R. Sarkar And J. Chattopadhyay, Impacts of incubation delay on the dynamics of an eco-epidemiological system – a theoretical study, Bulletin of Mathematical Biology., 70, 2017 - 2038 (2008).
• M Rahuman Sheriff And R. R. Sarkar*, Computational Approaches and Modelling of Signaling Processes in Immune System, Proceedings of the Indian National Science Academy., 74, 4 - 4 (2008), DOI:187-200.
• R.R. Sarkar, J. Pal, K.P. Das And J. Chattopadhyay, Control of Harmful Algal Blooms through input of Competitive Phytoplankton and the Effect of Environmental Variability, Journal of the Calcutta Mathematical Society., 1&2, 1 - 8 (2008).
• P. Banik, P. Pramanik, R. R. Sarkar, S. Bhattacharya And J. Chattopadhayay, A mathematical model on the effect of Medicago denticulata weed on different winter crops, BioSystems., 90, 818 - 829 (2007), DOI:Elsevier Science.
• R. R. Sarkar*, R. Bhattacharyya, B. Mukhopadhyay And S. Banerjee, Time lags can control algal blooms in two harmful phytoplankton-zooplankton system, Applied Mathematics and Computation., 186, 445 - 459 (2007).
• R.R. Sarkar* And S. Banerjee , A time delay model for control of malignant tumor growth, Nonlinear Phenomena in Medical and Biological Sciences: Proceedings of the Third National Conference on Nonlinear Systems and Dynamics., , (2006).
  M. Lakshmanan and R. Sahadevan (eds.) Proceedings of the Third National Conference on Nonlinear Systems and Dynamics, pp.223-226, NCNSD-2006 (ISBN: 81-7764-993-0), Allied Publishers Pvt. Ltd.
• R.R. Sarkar, S.V. Petrovskii, M. Biswas, A. Gupta And J. Chattopadhyay, An Ecological Study of a Marine Plankton Community based on the field data collected from Bay of Bengal, Ecological Modelling., 193, 589 - 601 (2006).
• R.R. Sarkar*, The occurrence of Malignant Malaria – a Model Based Study, The SPSS Analyst., 1, 11 - 15 (2005).
• N. Bairagi, P.K. Roy,  R.R. Sarkar And J. Chattopadhyay, Virus replication factor may be a controlling agent for obtaining disease -free system in a multi-species eco-epidemiological system, Journal of Biological Systems., 13(3), 245 - 259 (2005).
• H. Malchow, F.M. Hilker,  R.R. Sarkar And K. Brauer, Spatiotemporal Patterns in an excitable Plankton System with Lysogenic Viral infection, Mathematical and Computer Modelling., 42, 1035 - 1048 (2005).
• R.R. Sarkar* And H. Malchow, Nutrient and Toxin Producing Phytoplankton Control Algal Blooms - a Spatiotemporal Study in a Noisy Environment, Journal of Bioscience., 30, 749 - 760 (2005).
• R.R. Sarkar*, S. Pal And J. Chattopadhyay, Role of toxin producing plankton and their effect on phytoplankton-zooplankton system - a mathematical study supported by experimental findings, BioSystems., 80, 11 - 23 (2005).
• R.R. Sarkar* And S. Banerjee, Cancer self remission and tumour stability - a stochastic approach, Mathematical Biosciences., 196, 65 - 81 (2005).
• R.R. Sarkar*, Mathematical modelling of harmful algal blooms, Complexity and Integrated Resources Management: Transactions of the 2nd Biennial Meeting of the International Environmental Modelling and Software Society., 2, 876 - 882 (2004).
  Pahl-Wostl, C., Schmidt, S., Rizzoli, A.E. and Jakeman, A.J. (eds), Complexity and Integrated Resources Management, Transactions of the 2nd Biennial Meeting of the International Environmental Modelling and Software Society, iEMSs, 2004, (ISBN: 88-900787-1-5; http://www.iemss.org).
• J. Chattopadhyay,  R.R. Sarkar, S, Chaki, S And Bhattacharya, Effects of Environmental Fluctuations on the Occurrence of Malignant Malaria - A Model Based Study, Ecological Modelling., 177, 179 - 192 (2004).
• R. R. Sarkar*, A stochastic model for autotroph - herbivore system with nutrient recycling, Ecological Modelling., 178, 429 - 440 (2004).
• J. Chattopadhyay,  R.R. Sarkar And S.Pal, Mathematical modelling of harmful algal blooms supported by experimental findings, Ecological Complexity., 1, 225 - 235 (2004).
• J. Chattopadhyay And R.R. Sarkar, Chaos to order: preliminary experiments with a population dynamics models of three trophic levels, Ecological Modelling., 163, 45 - 50 (2003).
• J. Chattopadhyay,  R.R. Sarkar And S. Pal, Dynamics of nutrient-phytoplankton interaction in the presence of viral infection, BioSystems., 68, 5 - 17 (2003).
• R. R. Sarkar And J. Chattopadhyay, A technique for maximum harvesting effort in a noise induced bioeconomic fishery model, Journal of Bioscience ., 28, 497 - 506 (2003).
• Ram Rup Sarkar And J. Chattopadhyay, Occurrence of planktonic blooms under environmental fluctuations and its possible control mechanism - mathematical models and experimental observations, Journal of Theoretical Biology., 224, 501 - 516 (2003).
• R.R. Sarkar And J. Chattopadhyay, The role of environmental stochasticity in a toxic phytoplankton - non-toxic phytoplankton - zooplankton system, Environmetrics., 14, 775 - 792 (2003).
• J. Chattopadhyay,  R.R. Sarkar And S. Mandal, Toxin producing plankton may act as a biological control for planktonic blooms- field study and mathematical modeling, Journal of Theoretical Biology., 215(3), 333 - 344 (2002).
• J. Chattopadhyay,  R.R. Sarkar And G. Ghosal, Removal of infected prey prevent limit cycle oscillations in an infected prey-predator system - a mathematical study, Ecological Modelling., 156, 113 - 121 (2002).
• J. Chattopadhyay,  R.R. Sarkar And A. El abdllaoui, A delay differential equation model on harmful algal blooms in the presence of toxic substances,  IMA Journal of Mathematics Applied in Medicine and Biology., 19, 137 - 161 (2002).
• Ram Rup Sarkar, J. Chattopadhyay And N. Bairagi, Effect of environmental fluctuation on an eco-epidemiological model of Salton Sea, Environmetrics., 12, 289 - 300 (2001).
• J. Chattopadhyay,  Ram Rup Sarkar, G. Ghoshal And S. Ghosh, Uniqueness of limit cycle of a harvested prey-predator system with Holling type III functional response, Nonlinear Studies., 8, 261 - 281 (2001).
• J. Chattopadhyay,  Ram Rup Sarkar, Maria Elena Fritzsche- Hoballah, Ted C. J. Turlings And Louis-Felix Bersier, Parasitoids may determine plant fitness - a mathematical model based on experimental data, Journal of Theoretical Biology., 212, 295 - 302 (2001).
• J. Chattopadhyay, N. Bairagi And  Ram Rup Sarkar, A predator-prey model with some cover on prey species, Nonlinear Phenomena in Complex Systems., 3:4, 407 - 420 (2000).